Now let me step back from the problem and very generally discuss natural selection and what we know about it. I think it is safe to say that we know for sure that natural selection, as a process, does work. There is a mountain of experimental and observational evidence, much of it predating genetics, which shows that natural selection as a biological process works.
David M. RaupThere are about 250,000 different species of fossil plants and animals known . . In spite of this large quantity of information, it is but a tiny fraction of the diversity that [according to the theory] actually lived in the past. There are well over a million species living today and . . [it is] possible to predict how many species ought to be in our fossil record. That number is at least 100 times the number we have found.
David M. RaupIt has been argued that dinosaurs did not die out, but just evolved wings and flew away. At a certain level, this reasoning is sound.... Birds, as a group, did descend from dinosaurs and ... all 8,600 species of birds living today carry some inheritance from their reptilian ancestors.
David M. RaupPerhaps the only thing that saves science from invalid conventional wisdom that becomes effectively permanent is the presence of mavericks in every generation - people who keep challenging convention and thinking up new ideas for the sheer hell of it or from an innate contrariness.
David M. RaupThe charge that the construction of the geologic scale involves circularity has a certain amount of validity. ...Thus, the procedure is far from ideal and the geologic ranges are constantly being revised (usually extended) as new occurrences are found.
David M. RaupA large number of well-trained scientists outside of evolutionary biology and paleontology have unfortunately gotten the idea that the fossil record is far more Darwinian than it is. This probably comes from the oversimplification inevitable in secondary sources: low-level textbooks semipopular articles, and so on. Also, there is probably some wishful thinking involved. In the years after Darwin, his advocates hoped to find predictable progressions. In general. these have not been found-yet the optimism has died hard and some pure fantasy has crept into textbooks.
David M. Raup