I have spent a lot of time arguing that the theory of group selection is not the stupid, pernicious doctrine that many biologists once claimed it to be. The theory is not just conceptually coherent; there are adaptations out there in nature (like reduced virulence in some viruses) that evolved because there was group selection.

The indispensability argument says (roughly) that if you have ample reason to accept an empirical scientific theory that makes indispensable use of mathematics, and that theory entails that numbers exist, then you have ample reason to accept that numbers exist. The argument affirms the antecedent of this conditional, and concludes that you have ample reason to believe that numbers exist. What is striking about this argument is that it seems to show that the empirical reasons that suffice for accepting a scientific theory also suffice for accepting a metaphysical claim.

The rabid opposition to group selection has now considerably subsided. In the process, the conceptual structure of evolutionary theory has become clearer, as have the relationships that connect different theoretical approaches.

It is an interesting fact about model selection that the evidence at hand can indicate that a model known to be false will be more predictively accurate than a model known to be true. This opens the door to a kind of instrumentalism.

Philosophers of biology generally recognize that evolutionary fitness (roughly, an organism's ability to survive and reproduce in its environment) is multiply realizable.

"Methodological naturalism" and "metaphysical naturalism" are terms that often surface in the continuing battle between evolutionary biology and creationism/intelligent design. The methodological thesis says that scientific theories shouldn't postulate supernatural entities; the metaphysical thesis says that no such entities exist. In this debate, God is the supernatural entity at issue; the question isn't whether science gets to talk about mathematical entities if Platonism is correct.

Deism is compatible with evolutionary theory.