Darwin and his successors have railed against the fallacy of confusing the current utility of a trait with the reason the trait evolved. For example, Darwin argued that skull sutures in mammals did not evolve because they facilitate live birth; the sutures were in place well before live birth evolved. Checking the chronological order in which different traits evolved in a lineage is one way to test an adaptive hypothesis; the fact of common ancestry is what makes that checking possible.

In many contexts, simplicity is not an aesthetic frill.

Evolutionary biologists often appeal to parsimony when they seek to explain why organisms "match" with respect to a given trait. For example, why do almost all the organisms that are alive today on our planet use the same genetic code? If they share a common ancestor, the code could have evolved just once and then been inherited from the most recent common ancestor that present organisms share. On the other hand, if organisms in different species share no common ancestors, the code must have evolved repeatedly.

Just as thought experiments can't show that vitalism is true (or that it is false), they also can't show that dualism is true (or that it is false).

Deism is compatible with evolutionary theory.

Methodological naturalism gives advice to scientists about what they should include in their theories. There is a second type of methodological naturalism that gives advice to philosophers, which I call "methodological naturalismp." It says that the methods that philosophers should use in assessing philosophical theories are limited to the methods that scientists ought to use in assessing scientific theories.

Instead of thinking of the question of race genealogically, and leaving it open whether vernacular races are genealogical units, the interest in biomedicine has been to determine whether vernacular racial categories are medically useful in diagnosis and treatment. There is on-going debate about this.