"Methodological naturalism" and "metaphysical naturalism" are terms that often surface in the continuing battle between evolutionary biology and creationism/intelligent design. The methodological thesis says that scientific theories shouldn't postulate supernatural entities; the metaphysical thesis says that no such entities exist. In this debate, God is the supernatural entity at issue; the question isn't whether science gets to talk about mathematical entities if Platonism is correct.
Elliott SoberOur own species evolved under the influence of group selection, as Darwin emphasized when he discussed the evolution of altruism.
Elliott SoberDeism claims that God creates the universe and the laws of nature and then is hands-off, with everything that subsequently happens in nature being due to natural processes.
Elliott SoberDarwin and his successors have railed against the fallacy of confusing the current utility of a trait with the reason the trait evolved. For example, Darwin argued that skull sutures in mammals did not evolve because they facilitate live birth; the sutures were in place well before live birth evolved. Checking the chronological order in which different traits evolved in a lineage is one way to test an adaptive hypothesis; the fact of common ancestry is what makes that checking possible.
Elliott Sober