As can be seen even by this limited number of examples proteins carry out amazingly diverse functions.
Michael BeheIn Darwin's time all of biology was a black box: not only the cell, or the eye, or digestion, or immunity, but every biological structure and function because, ultimately, no one could explain how biological processes occurred.
Michael BeheBiology has progressed tremendously due to the model that Darwin put forth. But the black boxes Darwin accepted are now being opened, and our view of the world is again being shaken.
Michael BeheIn the abstract, it might be tempting to imagine that irreducible complexity simply requires multiple simultaneous mutations - that evolution might be far chancier than we thought, but still possible. Such an appeal to brute luck can never be refuted... Luck is metaphysical speculation; scientific explanations invoke causes.
Michael BeheThe first point one has to get straight in discussions like this, is that ID is not the opposite of evolution. Rather, it is the opposite of Darwinism, which says life evolved by an utterly unguided, undirected mechanism. If god directed the process of evolution, or rigged the universe to produce complex life, then that is not Darwinism - it is intelligent design.
Michael Behe